/**
 * General configuration
 */
YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Homo_sapiens.GRCh37.reference";
//YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Rattus_norvegicus.RGSC3.4.reference";
//YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Canis_familiaris.BROADD2.reference";
YAHOO.dasBrowser.genome.karyotypeStructure.karyotype.zoomConf.defaultValues = [1,153264619,154085448];
YAHOO.dasBrowser.genome.karyotypeStructure.entryPoints.userEntryPoints = [1,5,6];
//YAHOO.dasBrowser.genome.panel.userContainers = ['sequenceView', 'zoomView', 'chromosomeView', 'karyotypeView']; //Possible containers ... ['annotationListView', 'sequenceView', 'zoomView', 'bandView', 'chromosomeView', 'karyotypeView', 'copyNumberView', 'test']

/**
 * Sources
 */
//panel options: karyotype, chromosome, band, zoom. Karyotype includes, chromosome, band and zoom. Chromosome includes band and zoom.
//representation options: mark, line, chart, track

var source = new Object();
source.id = 'DS_717';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/cytochip3_36/features';
source.name ='cytochip3_36';
source.label =['EBI'];
source.description ='cytochip3_36';
source.representation ='mark';
source.panel ='chromosome';
source.ntLimit =null;
source.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source);


var source = new Object();
source.id = 'local44';
source.url ='http://beta.gepas.bioinfo.cipf.es/dasviewer-1.0.0/das/cnv_test4/features';
source.name ='cnv';
source.label =['ENSEMBL'];
source.description ='cnv';
source.representation ='line';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source);


var source = new Object();
source.id = 'DS_717';
source.url ='http://www.ensembl.org/das/Homo_sapiens.NCBI36.karyotype/features';
source.name ='citobands';
source.label =['EBI'];
source.description ='citobans';
source.representation ='track';
source.panel ='karyotype';
source.ntLimit =null;
source.types = ['band:gpos100','band:gneg'];
YAHOO.dasBrowser.genome.annotations.sources.push(source);



var source = new Object();
source.id = 'local60';
source.url ='http://das.sanger.ac.uk/das/hgnc36/features';
source.name ='genes';
source.label =['ENSEMBL'];
source.description ='hgnc36';
source.representation ='mark';
//source.representation ='track';
source.panel ='zoom';
source.ntLimit =17000000;
source.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source);


var source = new Object();
source.id = 'DS_224';
source.url ='http://das.ensembl.org/das/toronto_poly/features';
source.name ='toronto poly';
source.label =['ENSEMBL'];
source.description ='toronto poly ids, copy number variations, group ids and notes';
source.representation ='track';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://das.sanger.ac.uk/das/decipher/features';
source.name ='Decipher';
source.label =['ENSEMBL'];
source.description ='Decipher';
source.representation ='track';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'local02';
source.url ='http://www.ensembl.org/das/Homo_sapiens.NCBI36.translation/features';
source.name ='Exon';
source.label =['ENSEMBL'];
source.description ='translation';
source.representation ='mark';
source.panel ='zoom';
source.ntLimit =200000;
source.types = [];
YAHOO.dasBrowser.genome.annotations.sources.push(source);



	
